# main imports import numpy as np import pandas as pd import sys, os, argparse import subprocess import time import json # models imports from sklearn.utils import shuffle from sklearn.externals import joblib from sklearn.metrics import accuracy_score, f1_score, recall_score, roc_auc_score from sklearn.model_selection import cross_val_score from sklearn.model_selection import StratifiedKFold from sklearn.model_selection import train_test_split # image processing imports from ipfml import processing from PIL import Image # modules imports sys.path.insert(0, '') # trick to enable import of main folder module import custom_config as cfg # variables and parameters threshold_map_folder = cfg.threshold_map_folder threshold_map_file_prefix = cfg.threshold_map_folder + "_" markdowns_folder = cfg.models_information_folder final_csv_model_comparisons = cfg.csv_model_comparisons_filename models_name = cfg.models_names_list zones = cfg.zones_indices current_dirpath = os.getcwd() def main(): parser = argparse.ArgumentParser(description="Save data results of learned model") parser.add_argument('--data', type=str, help='Interval value to keep from svd', default='"0, 200"') parser.add_argument('--model', type=str, help='.joblib or .json file (sklearn or keras model)') parser.add_argument('--choice', type=str, help='Name of the model used', choices=cfg.models_names_list) parser.add_argument('--zones', type=int, help='Number of zones used when learning') parser.add_argument('--feature', type=str, help='feature data choice', choices=cfg.features_choices_labels) parser.add_argument('--mode', type=str, help='Kind of normalization level wished', choices=cfg.normalization_choices) args = parser.parse_args() p_data_file = args.data p_model_file = args.model p_model_name = args.choice p_zones = args.zones p_feature = args.feature p_mode = args.mode model_scores = [] ######################## # 1. Get and prepare data ######################## dataset_train = pd.read_csv(p_data_file + '.train', header=None, sep=";") dataset_test = pd.read_csv(p_data_file + '.test', header=None, sep=";") # default first shuffle of data dataset_train = shuffle(dataset_train) dataset_test = shuffle(dataset_test) # get dataset with equal number of classes occurences noisy_df_train = dataset_train[dataset_train.ix[:, 0] == 1] not_noisy_df_train = dataset_train[dataset_train.ix[:, 0] == 0] nb_noisy_train = len(noisy_df_train.index) noisy_df_test = dataset_test[dataset_test.ix[:, 0] == 1] not_noisy_df_test = dataset_test[dataset_test.ix[:, 0] == 0] nb_noisy_test = len(noisy_df_test.index) final_df_train = pd.concat([not_noisy_df_train[0:nb_noisy_train], noisy_df_train]) final_df_test = pd.concat([not_noisy_df_test[0:nb_noisy_test], noisy_df_test]) # shuffle data another time final_df_train = shuffle(final_df_train) final_df_test = shuffle(final_df_test) final_df_train_size = len(final_df_train.index) final_df_test_size = len(final_df_test.index) # use of the whole data set for training x_dataset_train = final_df_train.ix[:,1:] x_dataset_test = final_df_test.ix[:,1:] y_dataset_train = final_df_train.ix[:,0] y_dataset_test = final_df_test.ix[:,0] ####################### # 2. Getting model ####################### model = joblib.load(p_model_file) selected_indices = [(i + 1) for i in np.arange(len(model.support_)) if model.support_[i] == True] selected_indices_displayed = [i for i in np.arange(len(model.support_)) if model.support_[i] == True] print(selected_indices) # update dataset values using specific indices x_dataset_train = x_dataset_train.loc[:, selected_indices] x_dataset_test = x_dataset_test.loc[:, selected_indices] ####################### # 3. Fit model : use of cross validation to fit model ####################### model.estimator_.fit(x_dataset_train, y_dataset_train) train_accuracy = cross_val_score(model.estimator_, x_dataset_train, y_dataset_train, cv=5) ###################### # 4. Test : Validation and test dataset from .test dataset ###################### # we need to specify validation size to 20% of whole dataset val_set_size = int(final_df_train_size/3) test_set_size = val_set_size total_validation_size = val_set_size + test_set_size if final_df_test_size > total_validation_size: x_dataset_test = x_dataset_test[0:total_validation_size] y_dataset_test = y_dataset_test[0:total_validation_size] X_test, X_val, y_test, y_val = train_test_split(x_dataset_test, y_dataset_test, test_size=0.5, random_state=1) # update dataset values using specific indices y_test_model = model.estimator_.predict(X_test) y_val_model = model.estimator_.predict(X_val) y_train_model = model.estimator_.predict(x_dataset_train) # getting all scores val_accuracy = accuracy_score(y_val, y_val_model) test_accuracy = accuracy_score(y_test, y_test_model) train_f1 = f1_score(y_dataset_train, y_train_model) train_recall = recall_score(y_dataset_train, y_train_model) train_roc_auc = roc_auc_score(y_dataset_train, y_train_model) val_f1 = f1_score(y_val, y_val_model) val_recall = recall_score(y_val, y_val_model) val_roc_auc = roc_auc_score(y_val, y_val_model) test_f1 = f1_score(y_test, y_test_model) test_recall = recall_score(y_test, y_test_model) test_roc_auc = roc_auc_score(y_test, y_test_model) all_x_data = pd.concat([x_dataset_train, X_test, X_val]) all_y_data = pd.concat([y_dataset_train, y_test, y_val]) all_y_model = model.estimator_.predict(all_x_data) all_accuracy = accuracy_score(all_y_data, all_y_model) all_f1_score = f1_score(all_y_data, all_y_model) all_recall_score = recall_score(all_y_data, all_y_model) all_roc_auc_score = roc_auc_score(all_y_data, all_y_model) # stats of dataset sizes total_samples = final_df_train_size + val_set_size + test_set_size model_scores.append(final_df_train_size) model_scores.append(val_set_size) model_scores.append(test_set_size) model_scores.append(final_df_train_size / total_samples) model_scores.append(val_set_size / total_samples) model_scores.append(test_set_size / total_samples) # add of scores model_scores.append(train_accuracy) model_scores.append(val_accuracy) model_scores.append(test_accuracy) model_scores.append(all_accuracy) model_scores.append(train_f1) model_scores.append(train_recall) model_scores.append(train_roc_auc) model_scores.append(val_f1) model_scores.append(val_recall) model_scores.append(val_roc_auc) model_scores.append(test_f1) model_scores.append(test_recall) model_scores.append(test_roc_auc) model_scores.append(all_f1_score) model_scores.append(all_recall_score) model_scores.append(all_roc_auc_score) # add final line into data final_file_line = p_model_name + ';' + str(selected_indices_displayed) + '; ' + str(p_zones) + '; ' + p_feature + '; ' + p_mode for s in model_scores: final_file_line += '; ' + str(s) # Prepare writing in .csv file into results folder output_final_file_path = os.path.join(cfg.results_information_folder, final_csv_model_comparisons) if not os.path.exists(cfg.results_information_folder): os.makedirs(cfg.results_information_folder) output_final_file = open(output_final_file_path, "a") output_final_file.write(final_file_line + '\n') if __name__== "__main__": main()