/*
* @file malaria/Si.cpp
*
* This file is part of VLE, a framework for multi-modeling, simulation
* and analysis of complex dynamical systems
* http://www.vle-project.org
*
* Copyright (c) 2011 INRA http://www.inra.fr
*
* See the AUTHORS or Authors.txt file for copyright owners and contributors
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see .
*/
/* @@tagdepends: vle.extension.differential-equation @@endtagdepends
@@tagdynamic@@ */
#include
#include
#include
namespace malariaspread {
namespace ved = vle::extension::differential_equation;
class E2h :
public ved::DifferentialEquation
{
public:
E2h(const vle::devs::DynamicsInit& model,
const vle::devs::InitEventList& events) :
ved::DifferentialEquation(model,events)
{
//k_2 = events.getDouble("k_2"); // = ???
//beta_2 = events.getDouble("beta_2"); // = ???
b_2 = events.getDouble("b_2"); // = ???
delta_H2 = events.getDouble("delta_H2"); // = ???
d2_H2 = events.getDouble("d2_H2"); // = ???
H_2 = events.getDouble("H_2"); // = ???
phi_e2 = events.getDouble("phi_e2"); // = ???
phi_e1 = events.getDouble("phi_e1"); // = ???
_E2h = createVar("E2h");
_S2h = createExt("S2h");
_I2v = createExt("I2v");
//_Pth2 = createExt("Pth2");
_E1h= createExt("E1h");
/*_S2v= createExt("S2v");
_E2v= createExt("E2v"); */
}
virtual ~E2h()
{ }
void compute(const vle::devs::Time& /* time */)
{
// V_2 = grad(_S2v) + grad(_E2v) + grad(_I2v); //current size of all compartments at time t
grad(_E2h) = phi_e1*_E1h() - phi_e2*_E2h() + b_2*_S2h()*_I2v()/H_2 - delta_H2*_E2h() - d2_H2*_E2h();
}
private:
//contact proportion between a human belonging to the patch 2 and a mosquitoe belonging to the patch 2
//double beta_2;
//average number of that contact per unit time for that patch 2
//double k_2;
//inoculation rate of patch 2
double b_2;
// transition rate from E -> I for the patch 1 of the host population
double delta_H2;
// natural death rate of E in the host population for the patch 2
double d2_H2;
// size of host population for the patch 2
double H_2;
// migration rate of Infected (E) of host population of the patch 2 that left to patch 1 (Go)
double phi_e2;
// migration rate of Infected (E) of host population of the patch 1 that come to patch 2 (Come)
double phi_e1;
Var _E2h;
Ext _S2h;
Ext _I2v;
//Ext _Pth2;
Ext _E1h;
/* Ext _S2v;
Ext _E2v; */
};
} // namespace malariaspread
DECLARE_DYNAMICS(malariaspread::E2h)