/*
* @file malaria/Si.cpp
*
* This file is part of VLE, a framework for multi-modeling, simulation
* and analysis of complex dynamical systems
* http://www.vle-project.org
*
* Copyright (c) 2011 INRA http://www.inra.fr
*
* See the AUTHORS or Authors.txt file for copyright owners and contributors
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see .
*/
/* @@tagdepends: vle.extension.differential-equation @@endtagdepends
@@tagdynamic@@ */
#include
#include
#include
namespace malariaspread {
namespace ved = vle::extension::differential_equation;
class I2h :
public ved::DifferentialEquation
{
public:
I2h(const vle::devs::DynamicsInit& model,
const vle::devs::InitEventList& events) :
ved::DifferentialEquation(model,events)
{
delta_H2 = events.getDouble("delta_H2");; // = ???
alpha_2 = events.getDouble("alpha_2"); // = ???
gamma_2 = events.getDouble("gamma_2"); // = ???
d2_H2 = events.getDouble("d2_H2"); // = ???
_I2h = createVar("I2h");
_E2h = createExt("E2h");
}
virtual ~I2h()
{ }
void compute(const vle::devs::Time& /* time */)
{
grad(_I2h) = delta_H2*_E2h() - alpha_2*_I2h() - gamma_2*_I2h() - d2_H2*_I2h();
}
private:
// transition rate from E -> I for the patch 2 of the host population
double delta_H2;
// transition rate from I -> R for the patch 2 of the host population
double alpha_2;
//death rate due to the disease
double gamma_2;
// natural death rate of I in the host population for the patch 2
double d2_H2;
Var _I2h;
Ext _E2h;
};
} // namespace malariaspread
DECLARE_DYNAMICS(malariaspread::I2h)