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- /*
- * @file malaria/Si.cpp
- *
- * This file is part of VLE, a framework for multi-modeling, simulation
- * and analysis of complex dynamical systems
- * http://www.vle-project.org
- *
- * Copyright (c) 2011 INRA http://www.inra.fr
- *
- * See the AUTHORS or Authors.txt file for copyright owners and contributors
- *
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation, either version 3 of the License, or
- * (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program. If not, see <http://www.gnu.org/licenses/>.
- */
- /* @@tagdepends: vle.extension.differential-equation @@endtagdepends
- @@tagdynamic@@ */
- #include <vle/extension/DifferentialEquation.hpp>
- #include <iostream>
- #include <sstream>
- namespace malariaspread {
- namespace ved = vle::extension::differential_equation;
- class E21h :
- public ved::DifferentialEquation
- {
- public:
- E21h(const vle::devs::DynamicsInit& model,
- const vle::devs::InitEventList& events) :
- ved::DifferentialEquation(model,events)
- {
-
- k_1 = events.getDouble("k_1"); // = ???
-
- beta_1 = events.getDouble("beta_1"); // = ???
-
- delta_H1 = events.getDouble("delta_H1"); // = ???
-
- d1_H1 = events.getDouble("d1_H1"); // = ???
- H_1 = events.getDouble("H_1"); // = ???
- phi_e2 = events.getDouble("phi_e2"); // = ???
-
-
-
- _E21h = createVar("E21h");
- _S21h = createExt("S21h");
- _I1v = createExt("I1v");
- //_Pth1 = createExt("Pth1");
- _E2h= createExt("E2h");
- /*_S1v= createExt("S1v");
- _E1v= createExt("E1v"); */
-
- }
- virtual ~E21h()
- { }
- void compute(const vle::devs::Time& /* time */)
- {
-
- grad(_E21h) = phi_e2*_E2h() + k_1*beta_1*_S21h()*_I1v()/H_1 - delta_H1*_E21h() - d1_H1*_E21h();
- }
- private:
-
- //contact proportion between a human belonging to the patch 1 and a mosquitoe belonging to the patch 1
- double beta_1;
- //average number of that contact per unit time for that patch 1
- double k_1;
- // transition rate from E -> I for the patch 1 of the host population
- double delta_H1;
- // natural death rate of E in the host population for the patch 1
- double d1_H1;
- // size of host population for the patch 1
- double H_1;
- // migration rate of Infected (E) of host population of the patch 2 that left to patch 1 (Go)
- double phi_e2;
-
- double migr;
-
-
- Var _E21h;
- Ext _S21h;
- Ext _I1v;
- //Ext _Pth1;
- Ext _E2h;
- /* Ext _S1v;
- Ext _E1v; */
-
- };
- } // namespace malariaspread
- DECLARE_DYNAMICS(malariaspread::E21h)
-
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