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- /*
- * @file malaria/Si.cpp
- *
- * This file is part of VLE, a framework for multi-modeling, simulation
- * and analysis of complex dynamical systems
- * http://www.vle-project.org
- *
- * Copyright (c) 2011 INRA http://www.inra.fr
- *
- * See the AUTHORS or Authors.txt file for copyright owners and contributors
- *
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation, either version 3 of the License, or
- * (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program. If not, see <http://www.gnu.org/licenses/>.
- */
- /* @@tagdepends: vle.extension.differential-equation @@endtagdepends
- @@tagdynamic@@ */
- #include <vle/extension/DifferentialEquation.hpp>
- #include <iostream>
- #include <sstream>
- namespace malariaspread {
- namespace ved = vle::extension::differential_equation;
- class S1h :
- public ved::DifferentialEquation
- {
- public:
- S1h(const vle::devs::DynamicsInit& model,
- const vle::devs::InitEventList& events) :
- ved::DifferentialEquation(model,events)
- {
-
- mu1_H1 = events.getDouble("mu1_H1"); // = ???
- //k_1 = events.getDouble("k_1"); // = ???
-
- //beta_1 = events.getDouble("beta_1"); // = ???
-
- b_1 = events.getDouble("b_1"); // = ???
- d1_H1 = events.getDouble("d1_H1"); // = ???
- H_1 = events.getDouble("H_1"); // = ???
-
- phi_s1 = events.getDouble("phi_s1"); // = ???
-
- phi_s2 = events.getDouble("phi_s2"); // = ???
-
- epsilon_1 = events.getDouble("epsilon_1"); // = ???
-
- _S1h = createVar("S1h");
- _I1v = createExt("I1v");
- _R1h = createExt("R1h");
- //_Pth1 = createExt("Pth1");
- _S2h= createExt("S2h");
- /* _S1v= createExt("S1v");
- _E1v= createExt("E1v"); */
-
- }
- virtual ~S1h()
- { }
- void compute(const vle::devs::Time& /* time */)
- {
- // H_1 = grad(_S1h) + grad(_E1h) + grad(_I1h); //current size of all compartments at time t
-
-
- grad(_S1h) = mu1_H1*H_1 + phi_s2*_S2h() - phi_s1*_S1h() + epsilon_1*_R1h() - b_1*_S1h()*_I1v()/H_1 - d1_H1*_S1h();
- }
- private:
-
- //birth rate of host population of the patch 1
- double mu1_H1;
- //contact proportion between Susceptibles humans of the patch 1 and Infectious mosquitoes of the patch 1
- //double beta_1;
- //average number of that contact per unit time for that patch 1
- //double k_1;
- //inoculation rate of patch 1
- double b_1;
-
- // size of host population for the patch 1
- double H_1;
- // natural death rate of S in the host population for the patch i
- double d1_H1;
- // migration rate of Susceptibles of host population of the patch 1 that left to patch 2 (Go)
- double phi_s1;
- // migration rate of Susceptible of host population of the patch 2 that come to patch 1 (Come)
- double phi_s2;
- //transition rate from R -> S in the host population for the patch 2
- double epsilon_1;
-
- Var _S1h;
- Ext _I1v;
- Ext _R1h;
- //Ext _Pth1;
- Ext _S2h;
- /* Ext _S1v;
- Ext _E1v; */
-
-
- };
- } // namespace malariaspread
- DECLARE_DYNAMICS(malariaspread::S1h)
-
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