import numpy as np import time def emwnenmf(data,G,F,r,Tmax): MinIter = 10 tol = 1e-5 em_iter_max = round(Tmax/0.05)+1 # T = np.empty(shape=(em_iter_max+1)) T.fill(np.nan) RMSE = np.empty(shape=(2,em_iter_max+1)) RMSE.fill(np.nan) ITER_MAX=100 # maximum inner iteration number (Default) ITER_MIN=10 # minimum inner iteration number (Default) np.put(F,data.idxOF,data.sparsePhi_F) np.put(G,data.idxOG,data.sparsePhi_G) Xcomp = data.X + np.multiply(data.nW,np.dot(G,F)) FXt = np.dot(F,Xcomp.T) FFt = np.dot(F,F.T) GtX = np.dot(G.T,Xcomp) GtG = np.dot(G.T,G) GradG = np.dot(G,FFt)-FXt.T GradF = np.dot(GtG,F)-GtX init_delta = stop_rule(np.hstack((G.T,F)),np.hstack((GradG.T,GradF))) tolF = max(tol,1e-3)*init_delta tolG = tolF # Stopping tolerance # Iterative updating G = G.T k = 0 RMSE[:,k] = np.linalg.norm(F[:,0:-1]-data.F[:,0:-1],2,axis=1)/np.sqrt(F.shape[1]-1) T[k] = 0 t = time.time() # Main loop while time.time()-t <= Tmax+0.05: # Estimation step Xcomp = data.X + np.multiply(data.nW,np.dot(G.T,F)) # Compress left and right L,R = RSI_compression(Xcomp,r) X_L = np.dot(L,Xcomp) X_R = np.dot(Xcomp,R) # Maximisation step # Optimize F with fixed G F,iterF,_ = NNLS(F,GtG,GtX,ITER_MIN,ITER_MAX,tolF,data.idxOF,data.sparsePhi_F,False) # np.put(F,data.idxOF,data.sparsePhi_F) # print(F[:,0:5]) if iterF<=ITER_MIN: tolF = tolF/10 print('Tweaked F tolerance to '+str(tolF)) F_comp = np.dot(F,R) FFt = np.dot(F_comp,F_comp.T) FXt = np.dot(F_comp,X_R.T) # Optimize G with fixed F G,iterG,GradG = NNLS(G,FFt,FXt,ITER_MIN,ITER_MAX,tolG,data.idxOG,data.sparsePhi_G,True) # np.put(G.T,data.idxOG,data.sparsePhi_G) if iterG<=ITER_MIN: tolG = tolG/10 print('Tweaked G tolerance to '+str(tolG)) G_comp = np.dot(G,L.T) GtG = np.dot(G_comp,G_comp.T) GtX = np.dot(G_comp,X_L) GradF = np.dot(GtG,F) - GtX # Stopping condition # delta = stop_rule(np.hstack((G,F)),np.hstack((GradG,GradF))) # if (delta<=tol*init_delta and k>=MinIter): # print('break before Tmax') # break if time.time()-t - k*0.05 >= 0.05: k = k+1 RMSE[:,k] = np.linalg.norm(F[:,0:-1]-data.F[:,0:-1],2,axis=1)/np.sqrt(F.shape[1]-1) T[k] = time.time()-t if k%100==0: print(str(k)+' '+str(RMSE[0,k])+' '+str(RMSE[1,k])+' '+str(nmf_norm_fro(Xcomp,G.T,F))) # return {'G' : G.T, 'F' : F, 'RMSE' : RMSE, 'T': T, 'RMSEb' : RMSEb} return {'G' : G.T, 'F' : F, 'RMSE' : RMSE, 'T': T} def stop_rule(X,GradX): # Stopping Criterions pGrad = GradX[np.any(np.dstack((X>0,GradX<0)),2)] return np.linalg.norm(pGrad,2) def NNLS(Z,GtG,GtX,iterMin,iterMax,tol,idxfixed,fixed,transposed): L = np.linalg.norm(GtG,2) # Lipschitz constant H = Z # Initialization Grad = np.dot(GtG,Z)-GtX #Gradient alpha1 = 1 for iter in range(1,iterMax+1): H0 = H H = np.maximum(Z-Grad/L,0) # Calculate squence 'Y' if transposed: # If Z = G.T np.put(H.T,idxfixed,fixed) else: # If Z = F np.put(H,idxfixed,fixed) alpha2 = 0.5*(1+np.sqrt(1+4*alpha1**2)) Z = H + ((alpha1-1)/alpha2)*(H-H0) alpha1 = alpha2 Grad=np.dot(GtG,Z)-GtX # Stopping criteria if iter>=iterMin: # Lin's stopping criteria pgn = stop_rule(Z,Grad) if pgn <= tol: break return H,iter,Grad def nmf_norm_fro(X,G,F,*args): W = args if len(W)==0: f = np.square(np.linalg.norm(X-np.dot(G,F),'fro'))/np.square(np.linalg.norm(X,'fro')) else: W=W[0] f = np.square(np.linalg.norm(X-np.multiply(W,np.dot(G,F)),'fro'))/np.square(np.linalg.norm(X,'fro')) return f def RSI_compression(X,r): compressionLevel = 20 m,n = X.shape l = min(n,max(compressionLevel,r+10)) OmegaL = np.random.randn(n,l) Y = np.dot(X,OmegaL) for _ in range(4): Y = np.linalg.qr(Y,mode='reduced')[0] S = np.dot(X.T,Y) Z = np.linalg.qr(S,mode='reduced')[0] Y = np.dot(X,Z) L = np.linalg.qr(Y,mode='reduced')[0].T OmegaR = np.random.randn(l,m) Y = np.dot(OmegaR,X) for _ in range(4): Y = np.linalg.qr(Y.T,mode='reduced')[0] S = np.dot(X,Y) Z = np.linalg.qr(S,mode='reduced')[0] Y = np.dot(Z.T,X) R = np.linalg.qr(Y.T,mode='reduced')[0] return L,R