Thesis-NoiseDetection-26-attributes/optimization/ILSSurrogate.py

"""Iterated Local Search Algorithm implementation using surrogate as fitness approximation
"""

# main imports
import os
import logging
import joblib
import time

# module imports
from macop.algorithms.Algorithm import Algorithm
from .LSSurrogate import LocalSearchSurrogate

from sklearn.linear_model import (LinearRegression, Lasso, Lars, LassoLars,
                                    LassoCV, ElasticNet)

from wsao.sao.problems.nd3dproblem import ND3DProblem
from wsao.sao.surrogates.walsh import WalshSurrogate
from wsao.sao.algos.fitter import FitterAlgo
from wsao.sao.utils.analysis import SamplerAnalysis, FitterAnalysis, OptimizerAnalysis


# quick object for surrogate logging data
class SurrogateAnalysis():

    def __init__(self, time, every_ls, r2, evaluations, n_local_search):
        self._time = time
        self._every_ls = every_ls
        self._r2 = r2
        self._evaluations = evaluations
        self._n_local_search = n_local_search


class ILSSurrogate(Algorithm):
    """Iterated Local Search used to avoid local optima and increave EvE (Exploration vs Exploitation) compromise using surrogate


    Attributes:
        initalizer: {function} -- basic function strategy to initialize solution
        evaluator: {function} -- basic function in order to obtained fitness (mono or multiple objectives)
        operators: {[Operator]} -- list of operator to use when launching algorithm
        policy: {Policy} -- Policy class implementation strategy to select operators
        validator: {function} -- basic function to check if solution is valid or not under some constraints
        maximise: {bool} -- specify kind of optimization problem 
        currentSolution: {Solution} -- current solution managed for current evaluation
        bestSolution: {Solution} -- best solution found so far during running algorithm
        ls_iteration: {int} -- number of evaluation for each local search algorithm
        surrogate_file: {str} -- Surrogate model file to load (model trained using https://gitlab.com/florianlprt/wsao)
        start_train_surrogate: {int} -- number of evaluation expected before start training and use surrogate
        surrogate: {Surrogate} -- Surrogate model instance loaded
        ls_train_surrogate: {int} -- Specify if we need to retrain our surrogate model (every Local Search)
        solutions_file: {str} -- Path where real evaluated solutions are saved in order to train surrogate again
        callbacks: {[Callback]} -- list of Callback class implementation to do some instructions every number of evaluations and `load` when initializing algorithm
    """
    def __init__(self,
                 initalizer,
                 evaluator,
                 operators,
                 policy,
                 validator,
                 surrogate_file_path,
                 start_train_surrogate,
                 ls_train_surrogate,
                 solutions_file,
                 maximise=True,
                 parent=None):

        # set real evaluator as default
        super().__init__(initalizer, evaluator, operators, policy,
                validator, maximise, parent)

        self._n_local_search = 0
        self._main_evaluator = evaluator

        self._surrogate_file_path = surrogate_file_path
        self._start_train_surrogate = start_train_surrogate

        self._surrogate_evaluator = None
        self._surrogate_analyser = None

        self._ls_train_surrogate = ls_train_surrogate
        self._solutions_file = solutions_file

    def train_surrogate(self):
        """Retrain if necessary the whole surrogate fitness approximation function
        """
        # Following https://gitlab.com/florianlprt/wsao, we re-train the model
        # ---------------------------------------------------------------------------
        # cli_restart.py problem=nd3d,size=30,filename="data/statistics_extended_svdn" \
        #        model=lasso,alpha=1e-5 \
        #        surrogate=walsh,order=3 \
        #        algo=fitter,algo_restarts=10,samplefile=stats_extended.csv \
        #        sample=1000,step=10 \
        #        analysis=fitter,logfile=out_fit.csv

        problem = ND3DProblem(size=len(self._bestSolution._data)) # problem size based on best solution size (need to improve...)
        model = Lasso(alpha=1e-5)
        surrogate = WalshSurrogate(order=2, size=problem.size, model=model)
        analysis = FitterAnalysis(logfile="train_surrogate.log", problem=problem)
        algo = FitterAlgo(problem=problem, surrogate=surrogate, analysis=analysis, seed=problem.seed)

        # dynamic number of samples based on dataset real evaluations
        nsamples = None
        with open(self._solutions_file, 'r') as f:
            nsamples = len(f.readlines()) - 1 # avoid header

        training_samples = int(0.7 * nsamples) # 70% used for learning part at each iteration
        
        print("Start fitting again the surrogate model")
        print(f'Using {training_samples} of {nsamples} samples for train dataset')
        for r in range(10):
            print(f"Iteration n°{r}: for fitting surrogate")
            algo.run(samplefile=self._solutions_file, sample=training_samples, step=10)

        joblib.dump(algo, self._surrogate_file_path)


    def load_surrogate(self):
        """Load algorithm with surrogate model and create lambda evaluator function
        """

        # need to first train surrogate if not exist
        if not os.path.exists(self._surrogate_file_path):
            self.train_surrogate()

        self._surrogate = joblib.load(self._surrogate_file_path)

        # update evaluator function
        self._surrogate_evaluator = lambda s: self._surrogate.surrogate.predict([s._data])[0]

    def add_to_surrogate(self, solution):

        # save real evaluated solution into specific file for surrogate
        with open(self._solutions_file, 'a') as f:

            line = ""

            for index, e in enumerate(solution._data):

                line += str(e)
                
                if index < len(solution._data) - 1:
                    line += ","

            line += ";"
            line += str(solution._score)

            f.write(line + "\n")

    def run(self, evaluations, ls_evaluations=100):
        """
        Run the iterated local search algorithm using local search (EvE compromise)

        Args:
            evaluations: {int} -- number of global evaluations for ILS
            ls_evaluations: {int} -- number of Local search evaluations (default: 100)

        Returns:
            {Solution} -- best solution found
        """

        # by default use of mother method to initialize variables
        super().run(evaluations)

        # initialize current solution
        self.initRun()

        # enable resuming for ILS
        self.resume()

        # count number of surrogate obtained and restart using real evaluations done
        nsamples = None
        with open(self._solutions_file, 'r') as f:
            nsamples = len(f.readlines()) - 1 # avoid header

        if self.getGlobalEvaluation() < nsamples:
            print(f'Restart using {nsamples} of {self._start_train_surrogate} real evaluations obtained')
            self._numberOfEvaluations = nsamples

        if self._start_train_surrogate > self.getGlobalEvaluation():
        
            # get `self.start_train_surrogate` number of real evaluations and save it into surrogate dataset file
            # using randomly generated solutions (in order to cover seearch space)
            while self._start_train_surrogate > self.getGlobalEvaluation():
                
                newSolution = self._initializer()

                # evaluate new solution
                newSolution.evaluate(self._evaluator)

                # add it to surrogate pool
                self.add_to_surrogate(newSolution)

                self.increaseEvaluation()

        # train surrogate on real evaluated solutions file
        self.train_surrogate()
        self.load_surrogate()

        # local search algorithm implementation
        while not self.stop():

            # set current evaluator based on used or not of surrogate function
            self._evaluator = self._surrogate_evaluator if self._start_train_surrogate <= self.getGlobalEvaluation() else self._main_evaluator

            # create new local search instance
            # passing global evaluation param from ILS
            ls = LocalSearchSurrogate(self._initializer,
                         self._evaluator,
                         self._operators,
                         self._policy,
                         self._validator,
                         self._maximise,
                         parent=self)

            # add same callbacks
            for callback in self._callbacks:
                ls.addCallback(callback)

            # create and search solution from local search
            newSolution = ls.run(ls_evaluations)

            # if better solution than currently, replace it (solution saved in training pool, only if surrogate process is in a second process step)
            # Update : always add new solution into surrogate pool, not only if solution is better
            #if self.isBetter(newSolution) and self.start_train_surrogate < self.getGlobalEvaluation():
            if self._start_train_surrogate <= self.getGlobalEvaluation():

                # if better solution found from local search, retrained the found solution and test again
                # without use of surrogate
                fitness_score = self._main_evaluator(newSolution)
                # self.increaseEvaluation() # dot not add evaluation

                newSolution.score = fitness_score

                # if solution is really better after real evaluation, then we replace
                if self.isBetter(newSolution):
                    self._bestSolution = newSolution

                self.add_to_surrogate(newSolution)

                self.progress()

            # check using specific dynamic criteria based on r^2
            r_squared = self._surrogate.analysis.coefficient_of_determination(self._surrogate.surrogate)
            training_surrogate_every = int(r_squared * self._ls_train_surrogate)
            print(f"=> R^2 of surrogate is of {r_squared}. Retraining model every {training_surrogate_every} LS")

            # avoid issue when lauching every each local search
            if training_surrogate_every <= 0:
                training_surrogate_every = 1

            # check if necessary or not to train again surrogate
            if self._n_local_search % training_surrogate_every == 0 and self._start_train_surrogate <= self.getGlobalEvaluation():

                # train again surrogate on real evaluated solutions file
                start_training = time.time()
                self.train_surrogate()
                training_time = time.time() - start_training

                self._surrogate_analyser = SurrogateAnalysis(training_time, training_surrogate_every, r_squared, self.getGlobalMaxEvaluation(), self._n_local_search)

                # reload new surrogate function
                self.load_surrogate()

            # increase number of local search done
            self._n_local_search += 1

            self.information()

        logging.info(f"End of {type(self).__name__}, best solution found {self._bestSolution}")

        self.end()
        return self._bestSolution

    def addCallback(self, callback):
        """Add new callback to algorithm specifying usefull parameters

        Args:
            callback: {Callback} -- specific Callback instance
        """
        # specify current main algorithm reference
        if self.getParent() is not None:
            callback.setAlgo(self.getParent())
        else:
            callback.setAlgo(self)

        # set as new
        self._callbacks.append(callback)